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If you have your manual, the instructions are in there. Also in the little black book on the inside of the front cover is the default code. You must have the default code to start the process. Your friendly Ford stealer can furnish from your VIN number. You can PM me if you like and I can scan and email you the page from mine.
you dont need the factory key code. if it is the aftermarket ford accesory, it should have a code card in the box. switch the key on and of 5 or 8 times and end in the on posistion. the locks should cycle if working properly. press the lock buttons on each remote you have and then punch in the code from the keypad. just remember, they work like a fob not like keyless entry. they lock and unlock your doors with the vehicle off not running.