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My torqshift has a very delayed reverse engagement, delayed drive, but not always. The 3-4 upshift will sometimes hit neutral for a few seconds then bang into 4th.
Here lately it doesn't seem to know what gear it is in sometimes, like I can manually put it in 1st yet it will remain in 3rd even at a dead stop.
My guess is that you probably have a wire chaffing problem. You may also need to be reflashed, but I'm leaning more towards the wire chaffing issue. It seems like it's more of an electrical problem than it is mechanical.