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Well I bought a donor car today for the 5.0 and AOD it has. I plan to swap engine and transmission into my 51 Ford. Some small challenges but overall it will be a cool swap and give me the ability to drive my truck to work and restore a Ford in a Ford. I cannot stand the truck have a oil slinging Buick 3.8!
Sounds like a good move! Which year and model car did you pick up? Some of them have harnesses that lend themselves a little better to swaps than others.
I too am using ECM IV 5.0L with AOD and donor harness. I've eliminated the air pump, and return tube on exhaust manifold. Am having issues with high idle but hope that clears when I sort out the vacuum connections. Good Luck with your install, keep us posted.